This is a list of free software for use with H5MD files.
The HDF5 library provides interfaces for C, Fortran, C++, and Java.
HDF5 for Python provides a Pythonic interface to the HDF5 binary data format.
fortran_h5md is a Fortran module to facilitate the writing of H5MD files.
pyh5md is a Python module that facilitate reading and writing H5MD files.
ch5md is a set of C routines to read and write H5MD files.
HAL’s MD package is a high-precision molecular dynamics package for the large-scale simulation of simple and complex liquids.
ESPResSo is a highly versatile software package for scientific molecular dynamics simulations of coarse-grained atomistic or bead-spring models for soft matter research.
ESPResSo++ is a software package for the scientific simulation and analysis of coarse-grained atomistic or bead-spring models as they are used in soft matter research.
h5md-tools is a tool set for analysing, plotting, and manipulating data of molecular simulations stored in the H5MD file format.
VOTCA is an analysis package for molecular dynamics data that focuses on systematic coarse-graining and microscopic charge transport.